Gene and Drug Landing Page Aggregator

Gene and Drug Landing Page Aggregator (GDLPA) has links to 53 gene, 18 variant and 19 drug repositories that provide direct links to gene and drug landing pages. You can search by gene or drug name and then choose the sites that contain knowledge about your gene or drug of interest. Resources supported by the NIH Common Fund are listed first and have the CFDE logo at their top right corner.

Gene Examples: ACE2, ULK4, DPH7, KL
Variant Examples: chr1:g.115879821G>C, rs28897756

Gene-gene interactions (GGIs) from mRNA co-expression 

MaayanLab
ARCHS4
ARCHS4 site image

ARCHS4 provides access to gene counts from HiSeq 2000, HiSeq 2500 and NextSeq 500 platforms for human and mouse experiments from GEO and SRA.

GWAS image
GWAS site image

The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of SNP-trait associations, which can be easily integrated with other resources.

MaayanLab
Enrichr
Enrichr site image

Enrichr is an enrichment analysis tool that provides various types of visualization summaries of collective functions of gene sets.

GeneMANIA site logo
GeneMANIA site image

GeneMANIA builds subnetworks around an input gene using functional association data.

MaayanLab
Harmonizome
Harmonizome screenshot

The Harmonizome is a collection of knowledge about genes and proteins from 114 datasets created by processing 66 online resources to facilitate discovery via data integration.

Reactome image
Reactome site image

Reactome is a free, open-source, curated and peer-reviewed pathway database that provides intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge.

IDG
LDP 3.0
IDG Reactome Portal site image

IDG Reactome Portal provides biologist-friendly way to visualize proteins, complexes, and reactions in high-quality Reactome pathways.

LINCS image
SigCom LINCS
SigCom LINCS site image

SigCom LINCS data portal serves LINCS datasets and signatures. It provides a signature similarity search to query for mimicker or reverser signatures.

MaayanLab
CFDE Gene Partnership Appyter
Appyter screenshot

CFDE Gene Partnership uses FAIR APIs from different DCCs to find and present gene-centric knowledge.

IDG
Pharos
Pharos screenshot

The Pharos interface provides facile access to most data types collected by the Knowledge Management Center for the IDG program.

MARRVEL image
MARRVEL site image

MARRVEL enables users to search multiple public variant databases simultaneously and provides a unified interface to facilitate the search process.

MetGENE logo
MetGENE site screenshot

The objective of MetGENE is to identify the reactions catalyzed by the given gene(s) RPE and the related metabolites.

STRING image
STRING site image

STRING is a database of known and predicted protein-protein interactions and a functional enrichment tool covering more than 5000 genomes.

BioGPS image
BioGPS site image

BioGPS is a free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function.

MaayanLab
PrismEXP logo
PrismEXP Appyter site image

Automated Vector Quantization of Massive Co-expression RNA-seq Data Improves Gene Function Prediction (PrismEXP) is a new statistical approach for accurate gene function prediction.

MaayanLab
RGCSRS Appyter
RGCSRS Appyter site image

The RGCSRS Appyter provides visualizations of the RNA-seq signatures induced by CRISPR knockouts and chemical perturbagens. Signatures are computed from transformed data profiles from the LINCS L1000 data.

MaayanLab
Gene Centric GEO Reverse Search Appyter
Appyter screenshot

Gene Centric GEO Reverse Search Appyter enables users to query for a gene in a species of interest; it returns an interactive volcano plot of signatures in which the gene is up- or down-regulated.

HGNC image
HGNC site image

The HGNC database is a curated online repository of approved gene nomenclature, gene groups and associated resources including links to genomic, proteomic and phenotypic information.

KOMP image
IMPC site image

The Knockout Mouse Programme - International Mouse Phenotyping Consortium (KOMP-IMPC) has information about the functions of protein-coding genes in the mouse genome.

KEGG image
KEGG site image

KEGG is a database resource for understanding high-level functions and utilities of the biological system from molecular-level information.

NCBI image
NCBI site image

The NCBI Gene Database page provides information about nomenclature, RefSeqs, maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources.

OMIM image
OMIM site image

OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes that is freely available and updated daily.

WikiPathways logo
WikiPathways site image

WikiPathways was established to facilitate the contribution and maintenance of pathway information by the biology community.

PubMed image
PubMed site image

PubMed comprises more than 33 million citations for biomedical literature from MEDLINE, life science journals, and online books.

PDB image
PDB site image

PDB has information about the 3D shapes of proteins, nucleic acids, and complex assemblies that contribute to understanding everything from protein synthesis to health and disease.